Postdoctoral researchers

• Dr Kelly Wyres (DPhil) – K. pneumoniae genomics
• Dr Sebastian Duchene (PhD) – Phylogenomics
• Dr Margaret Lam (PhD) – Genomic islands in K. pneumoniae
• Dr Jane Hawkey (PhD) – Mobile elements and resistance; ISMapper developer
• Dr Zoe Dyson (PhD) – Typhoid genomics, University of Melbourne/University of Cambridge

Lab Manager

• Louise Judd (PhD) – Microbiome, Illumina & Nanopore sequencing

Graduate students

• Claire Gorrie (PhD student – thesis submitted and currently working at MDU) – K. pneumoniae genomic epidemiology
  co-supervisors: Adam Jenney, Alfred Hospital and Dick Strugnell, Dept Microbiology & Immunology
• Yu Wan (PhD student) – Bacterial gene networks
  co-supervisors: Justin Zobel, Dept Computing & Information Systems and Mike Inouye, Baker Institute
• Stephen Watts (PhD student) – Respiratory microbial communities, FastSpar developer
• Ryan Wick (PhD student; formerly MSc Bioinformatics and RA in the group) – Genome assembly, Bandage & Unicycler developer
• David Edwards (PhD student; formerly MSc Bioinformatics and RA in the group) – Evolution and selection in pathogen populations, RedDog developer
  co-supervisor: Bernard Pope, Melbourne Bioinformatics

Masters & Honours students

• Macgregor Todd (MSc Bioinformatics)
• Marialena Michanetzi (MSc Bioinformatics)
• Alex Tokolyi (Honours – Plasmid genomics)
• Roni Froumine (MSc Bioinformatics)

Honoraries / Visitors / PhD students based in other labs

• Dr Cadhla Firth (ARC DECRA Fellow) – School of BioSciences, University of Melbourne
• Dr Shu Mei Teo (Postdoc) – Human microbiome and asthma development (Inouye lab, Baker Institute)
• Dr Guillaume Meric (Postdoc) – Pathogen and microbiome genomics (Inouye lab, Baker Institute)
• Owen Qin (PhD student) – Host/microbe genetics (Inouye lab, Baker Institute)
• Qin Qin Huang (PhD student ) – Expression QTLs in immune development (Inouye lab, Baker Institute)
• Howard Chung (PhD student ) – Systems genomics of asthma (Inouye lab, Baker Institute)
• Jake Barber (PhD student) – Experimental evolution (McDonald lab, Monash University)
• Carl Britto (PhD student) – Enteric fever (Oxford Vaccine Group)

Alumni

• Danielle Ingle (PhD student) – E. coli genomics
• Dr Mark Schultz  (Postdoc) – A. baumannii phylogenomics and metagenomics
• Dr Paul McAdam (Postdoc) – TB phylogenomics
• Cassandra Litchfield (MSc Bioinformatics)
• Harriet Dashnow (MSc Bioinformatics/VLSCI intern) – SRST2 early development
• Louise Cerdeira (PhD student visiting from University of São Paulo) – KPC plasmids
• Gittan Blezer (MSc intership project from University of Utrecht) – K. pneumoniae core genome
• Morgan Cerqueira Alves (3rd-year Biochemistry research project) – ESBL in K. pneumoniae
• Wassif Kabir (3rd-year Biochemistry research project) – Salmonella Kentucky phylogenomics
• Roni Froumine (3rd-year Biochemistry research project) – CRISPR in K. pneumoniae
• Muhammad Fadli Bin Ismail (3rd-year Biochemistry research project) – K. oxytoca comparative genomics
• Partha Sarathi Gope (MPhil student) – Plasmid bioinformatics
• Damien Zammit (MSc Bioinformatics student) – Recombination analysis