Group members

Postdoctoral researchers

Lab Manager

Graduate students

  • Stephen Watts (PhD student) – Respiratory microbial genomics; FastSpar developer
  • Ryan Wick (PhD student) – Long read assembly; Bandage & Unicycler developer
  • David Edwards (PhD student) – Evolution and selection in pathogen populations; RedDog developer
  • Yu Wan (PhD student) – Bacterial gene networks

Masters & Honours students

  • Alex Tokolyi (Honours – Plasmid genomics)
  • Roni Froumine (MSc Bioinformatics)

Honoraries / Visitors / Grad students based in other labs

2018 Lab Retreat at Rye

Alumni

  • Claire Gorrie (PhD student) – K. pneumoniae genomic epidemiology
  • Danielle Ingle (PhD student) – E. coli genomics
  • Dr Mark Schultz  (Postdoc) – A. baumannii phylogenomics and metagenomics
  • Dr Paul McAdam (Postdoc) – TB phylogenomics
  • Macgregor Todd (MSc Bioinformatics)
  • Marialena Michanetzi (MSc Bioinformatics)
  • Cassandra Litchfield (MSc Bioinformatics)
  • Damien Zammit (MSc Bioinformatics) – Recombination analysis
  • Harriet Dashnow (VLSCI intern) – SRST2 early development
  • Partha Sarathi Gope (MPhil student) – Plasmid bioinformatics
  • Louise Cerdeira (Visiting PhD student from University of São Paulo) – KPC plasmids
  • Carl Britto (Visiting PhD student from Oxford University) – Enteric fever
  • Gittan Blezer (MSc internship project from University of Utrecht) – K. pneumoniae core genome
  • Morgan Cerqueira Alves (3rd-year Biochemistry research project) – ESBL in K. pneumoniae
  • Wassif Kabir (3rd-year Biochemistry research project) – Salmonella Kentucky phylogenomics
  • Roni Froumine (3rd-year Biochemistry research project) – CRISPR in K. pneumoniae
  • Muhammad Fadli Bin Ismail (3rd-year Biochemistry research project) – K. oxytoca comparative genomics
  • Hugh Cottingham (3rd-year Biochemistry research project) – Microbial enrichment from nasopharyngeal samples
  • Kalani Paranagama (3rd-year Biochemistry research project) – IS elements in K. pneumoniae

 

Some of the lab attending AMIGOS in Sydney (Ryan, Paul, Claire, Jane, Harriet, Shu Mei, Stephen, Wan)

Some of the lab attending AMIGOS in Sydney (Ryan, Paul, Claire, Jane, Harriet, Shu Mei, Stephen, Wan)

 

Lab members working on a team project to analyse the genomes of vancomycin resistant Enterococcus isolated from a local hospital.

Lab members working on a team project to analyse the genomes of vancomycin resistant Enterococcus isolated from a local hospital.

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