Group members

Lab Head – Prof Kat Holt (PhD)

ORCID • Google Scholar • PubMed • TwitterGitHub • MonashLSHTM

Postdoctoral researchers

Lab Manager

Graduate students

Masters & Honours students

  • Roni Froumine (MSc Bioinformatics)
  • Leo Featherstone (Honours)

Honoraries, Visitors & Grad students based in other labs

2018 Lab Retreat at Rye

Alumni

  • Claire Gorrie (PhD) – K. pneumoniae genomic epidemiology
  • Danielle Ingle (PhD) – E. coli genomics
  • Dr Mark Schultz  (Postdoc) – A. baumannii phylogenomics and metagenomics
  • Sebastian Duchene (Postdoc) – Phylodynamics
  • Dr Paul McAdam (Postdoc) – TB phylogenomics
  • Macgregor Todd (MSc Bioinformatics)
  • Marialena Michanetzi (MSc Bioinformatics)
  • Cassandra Litchfield (MSc Bioinformatics)
  • Damien Zammit (MSc Bioinformatics) – Recombination analysis
  • Alex Tokolyi (Honours) – Plasmid genomics
  • Harriet Dashnow (VLSCI intern) – SRST2 early development
  • Partha Sarathi Gope (MPhil) – Plasmid bioinformatics
  • Louise Cerdeira (Visiting PhD student from University of São Paulo) – KPC plasmids
  • Carl Britto (Visiting PhD student from Oxford University) – Enteric fever
  • Gittan Blezer (MSc internship project from University of Utrecht) – K. pneumoniae core genome
  • Morgan Cerqueira Alves (3rd-year Biochemistry research project) – ESBL in K. pneumoniae
  • Wassif Kabir (3rd-year Biochemistry research project) – Salmonella Kentucky phylogenomics
  • Roni Froumine (3rd-year Microbiology research project) – CRISPR in K. pneumoniae
  • Muhammad Fadli Bin Ismail (3rd-year Biochemistry research project) – K. oxytoca comparative genomics
  • Hugh Cottingham (3rd-year Biochemistry research project) – Microbial enrichment from nasopharyngeal samples
  • Kalani Paranagama (3rd-year Microbiology research project) – IS elements in K. pneumoniae
Some of the lab attending AMIGOS in Sydney (Ryan, Paul, Claire, Jane, Harriet, Shu Mei, Stephen, Wan)

Some of the lab attending AMIGOS in Sydney (Ryan, Paul, Claire, Jane, Harriet, Shu Mei, Stephen, Wan)

Lab members working on a team project to analyse the genomes of vancomycin resistant Enterococcus isolated from a local hospital.

Lab members working on a team project to analyse the genomes of vancomycin resistant Enterococcus isolated from a local hospital.

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