Group members

Postdoctoral researchers

Lab Manager

Graduate students

  • Claire Gorrie (PhD student – thesis submitted and currently working at MDU) – K. pneumoniae genomic epidemiology
    co-supervisors: Adam Jenney, Alfred Hospital and Dick Strugnell, Dept Microbiology & Immunology
  • Yu Wan (PhD student) – Bacterial gene networks
    co-supervisors: Justin Zobel, Dept Computing & Information Systems and Mike Inouye, Baker Institute
  • Stephen Watts (PhD student) – Respiratory microbial communities, FastSpar developer
  • Ryan Wick (PhD student; formerly MSc Bioinformatics and RA in the group) – Genome assembly, Bandage & Unicycler developer
  • David Edwards (PhD student; formerly MSc Bioinformatics and RA in the group) – Evolution and selection in pathogen populations, RedDog developer
    co-supervisor: Bernard Pope, Melbourne Bioinformatics

Masters & Honours students

  • Macgregor Todd (MSc Bioinformatics)
  • Marialena Michanetzi (MSc Bioinformatics)
  • Alex Tokolyi (Honours – Plasmid genomics)
  • Roni Froumine (MSc Bioinformatics)

Honoraries / Visitors / PhD students based in other labs

Alumni

  • Danielle Ingle (PhD student) – E. coli genomics
  • Dr Mark Schultz  (Postdoc) – A. baumannii phylogenomics and metagenomics
  • Dr Paul McAdam (Postdoc) – TB phylogenomics
  • Cassandra Litchfield (MSc Bioinformatics)
  • Harriet Dashnow (MSc Bioinformatics/VLSCI intern) – SRST2 early development
  • Louise Cerdeira (PhD student visiting from University of São Paulo) – KPC plasmids
  • Gittan Blezer (MSc intership project from University of Utrecht) – K. pneumoniae core genome
  • Morgan Cerqueira Alves (3rd-year Biochemistry research project) – ESBL in K. pneumoniae
  • Wassif Kabir (3rd-year Biochemistry research project) – Salmonella Kentucky phylogenomics
  • Roni Froumine (3rd-year Biochemistry research project) – CRISPR in K. pneumoniae
  • Muhammad Fadli Bin Ismail (3rd-year Biochemistry research project) – K. oxytoca comparative genomics
  • Partha Sarathi Gope (MPhil student) – Plasmid bioinformatics
  • Damien Zammit (MSc Bioinformatics student) – Recombination analysis

 

2018 Lab Retreat at Rye

 

Some of the lab attending AMIGOS in Sydney (Ryan, Paul, Claire, Jane, Harriet, Shu Mei, Stephen, Wan)

Some of the lab attending AMIGOS in Sydney (Ryan, Paul, Claire, Jane, Harriet, Shu Mei, Stephen, Wan)

 

Lab members working on a team project to analyse the genomes of vancomycin resistant Enterococcus isolated from a local hospital.

Lab members working on a team project to analyse the genomes of vancomycin resistant Enterococcus isolated from a local hospital.

Advertisements